Use of the weighted histogram analysis method for the analysis of simulated and parallel tempering simulations

/
alanine-dipeptide-2dpmf.jpg

John D. Chodera, William C. Swope, Jed W. Pitera, Chaok Seok, and Ken A. Dill.
J. Chem. Theor. Comput. 3(1):26–41, 2007 [DOI] [PDF]

The weighted histogram analysis method (WHAM), a mainstay of molecular dynamics simulation analysis, is thoroughly explained and modernized for the analysis of simulated and parallel tempering simulation data.